PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G41320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 391aa    MW: 42220.2 Da    PI: 7.2983
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G41320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.1e-31202260259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  OGLUM03G41320.1 202 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 260
                      699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247196262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-30199262IPR003657WRKY domain
SuperFamilySSF1182901.83E-26200262IPR003657WRKY domain
SMARTSM007744.3E-38201261IPR003657WRKY domain
PfamPF031068.8E-26203260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDMMEEEAAN AATAQAAAAG DLADVVARAN ARAFLVSTPH HHPSPLHPLP PPPPPMPQAP  60
HQYYPAPQIT IPYHHHHHHG ELRRPTTIAY TDAPVPFETA GPPSTVVDSY HHLTPGDAGY  120
GMPRPLALQI SQHALCGGGD VVMGSGGAGA ADDGEEAIRI SPLTPSAHHQ MMKRKNEVKK  180
VVCIPAPPAT SSRGGGGEVI PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCMARKQVE  240
RSRSDPNMLV ITYTAEHNHP WPMQRNVLAG YARSHHSTHA TASSSRHKQQ QQQQTNQLQP  300
ALITSSSSSS SSPFNLYADV VLGGQQANMM MTTTEGAGTG LGIQPSAADE VFAELEELEP  360
DNPTMINANM QVYSTTSRPG VSSYDHQWHK F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-172002621374WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097950.0AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630180.10.0PREDICTED: uncharacterized protein LOC4334831
SwissprotO647471e-56WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A0D9ZG060.0A0A0D9ZG06_9ORYZ; Uncharacterized protein
STRINGBGIOSGA013972-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os03g63810.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-55WRKY DNA-binding protein 35